Porphyromonas_A cangingivalis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas_A; s__Porphyromonas_A cangingivalis
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas; s__Porphyromonas cangingivalis
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas; s__Porphyromonas cangingivalis
NCBI Strain Identifiers NCTC12856
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (6 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.9%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 1
N50 Contigs 2,404,857 bp
Longest Contig 2,404,857 bp
Scaffold Count 1
N50 Scaffolds 2,404,857 bp
Longest Scaffold 2,404,857 bp
Genome Size 2,404,857 bp
Protein Count 2,049
Coding Density 87.95%
GC Percentage 47.62%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name 57043_C01
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA104167205
Country None
Date 2018-12-20
Genbank Assembly Accession GCA_900638305.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 1,939
Refseq Category na
Seq Rel Date 2018/12/20
Spanned Gaps 0
Species Taxid 36874
SSU Count 5
Submitter SC
Taxid 36874
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None