Avibacterium paragallinarum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pasteurellaceae; g__Avibacterium; s__Avibacterium paragallinarum
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Avibacterium; s__Avibacterium paragallinarum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Avibacterium; s__Avibacterium paragallinarum
NCBI Strain Identifiers NCTC11296
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (16 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.09%
CheckM Contamination 0.43%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 3
N50 Contigs 1,867,593 bp
Longest Contig 1,867,593 bp
Scaffold Count 3
N50 Scaffolds 1,867,593 bp
Longest Scaffold 1,867,593 bp
Genome Size 2,860,434 bp
Protein Count 3,093
Coding Density 87.56%
GC Percentage 41.13%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name 54424_E01
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA103899860
Country None
Date 2018-8-1
Genbank Assembly Accession GCA_900450705.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,004
Refseq Category na
Seq Rel Date 2018/08/01
Spanned Gaps 0
Species Taxid 728
SSU Count 5
Submitter SC
Taxid 728
Total Gap Length 0
Translation Table 11
tRNA Count (total) 50
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master UGHK00000000.1