Pseudomonas_E putida_A
Isolate HQ 5S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E putida_A
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas sp. LAMO17WK12:I6
NCBI Strain Identifiers LAMO17WK12:I6
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.05%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 0
23S Count 2
tRNA Count 19
Contig Count 30
N50 Contigs 366,918 bp
Longest Contig 582,370 bp
Scaffold Count 28
N50 Scaffolds 366,918 bp
Longest Scaffold 602,725 bp
Genome Size 6,092,576 bp
Protein Count 5,409
Coding Density 88.45%
GC Percentage 60.34%
Ambiguous Bases 0
GTDB representative GCF_002588485.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name IMG-taxon 2521172644 annotated assembly
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN05660659
Country None
Date 2017-9-28
Genbank Assembly Accession GCA_900215225.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 0
Protein Count 5,608
Refseq Category na
Seq Rel Date 2017/09/28
Spanned Gaps 2
Species Taxid 1286372
SSU Count 0
Submitter DOE - JOINT GENOME INSTITUTE
Taxid 1286372
Total Gap Length 680
Translation Table 11
tRNA Count (total) 60
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master OBDT00000000.1