Jannaschia aquimarina
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Jannaschia; s__Jannaschia aquimarina
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Jannaschia; s__Jannaschia aquimarina
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Jannaschia; s__Jannaschia aquimarina
NCBI Strain Identifiers DSM 28248
GTDB Type Material Designation type strain of species
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 98.33%
CheckM Contamination 0.61%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 38
N50 Contigs 257,527 bp
Longest Contig 815,996 bp
Scaffold Count 37
N50 Scaffolds 257,527 bp
Longest Scaffold 815,996 bp
Genome Size 4,117,706 bp
Protein Count 4,095
Coding Density 90.20%
GC Percentage 66.45%
Ambiguous Bases 0
GTDB representative GCF_000877395.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name IMG-taxon 2681813552 annotated assembly
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN05421775
Country None
Date 2017-7-16
Genbank Assembly Accession GCA_900188045.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 0
Protein Count 4,012
Refseq Category na
Seq Rel Date 2017/07/16
Spanned Gaps 1
Species Taxid 935700
SSU Count 1
Submitter DOE - JOINT GENOME INSTITUTE
Taxid 935700
Total Gap Length 358
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master FZPF00000000.1