Rhizorhabdus histidinilytica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Rhizorhabdus; s__Rhizorhabdus histidinilytica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas histidinilytica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas histidinilytica
NCBI Strain Identifiers UM2
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.1%
CheckM Contamination 0.9%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 59
N50 Contigs 409,683 bp
Longest Contig 768,618 bp
Scaffold Count 59
N50 Scaffolds 409,683 bp
Longest Scaffold 768,618 bp
Genome Size 5,473,339 bp
Protein Count 5,221
Coding Density 91.32%
GC Percentage 67.35%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name IMG-taxon 2706795026 annotated assembly
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN06295920
Country None
Date 2017-3-8
Genbank Assembly Accession GCA_900167915.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,178
Refseq Category na
Seq Rel Date 2017/03/08
Spanned Gaps 0
Species Taxid 439228
SSU Count 1
Submitter DOE - JOINT GENOME INSTITUTE
Taxid 439228
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master FUYM00000000.1