Leptospira interrogans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Leptospirae; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Leptospirales; f__Leptospiraceae; g__Leptospira; s__Leptospira interrogans
NCBI Strain Identifiers ATCC 43642
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (297 genomes in species cluster)
Genome Characteristics
CheckM Completeness 96.47%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 4
23S Count 2
tRNA Count 20
Contig Count 76
N50 Contigs 108,488 bp
Longest Contig 350,340 bp
Scaffold Count 57
N50 Scaffolds 133,191 bp
Longest Scaffold 350,340 bp
Genome Size 4,594,670 bp
Protein Count 3,665
Coding Density 75.54%
GC Percentage 35.01%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name IMG-taxon 2681812812 annotated assembly
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN05421689
Country None
Date 2017-1-15
Genbank Assembly Accession GCA_900156205.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,087
Refseq Category na
Seq Rel Date 2017/01/15
Spanned Gaps 19
Species Taxid 173
SSU Count 4
Submitter DOE - JOINT GENOME INSTITUTE
Taxid 173
Total Gap Length 4683
Translation Table 11
tRNA Count (total) 37
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master FTNA00000000.1