Idiomarina abyssalis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Alteromonadaceae; g__Idiomarina; s__Idiomarina abyssalis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Idiomarinaceae; g__Idiomarina; s__Idiomarina abyssalis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Idiomarinaceae; g__Idiomarina; s__Idiomarina abyssalis
NCBI Strain Identifiers KMM 227
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (22 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.28%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 12
N50 Contigs 336,962 bp
Longest Contig 1,100,368 bp
Scaffold Count 12
N50 Scaffolds 336,962 bp
Longest Scaffold 1,100,368 bp
Genome Size 2,675,401 bp
Protein Count 2,549
Coding Density 93.55%
GC Percentage 47.15%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name IMG-taxon 2642422567 annotated assembly
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04515657
Country None
Date 2016-11-2
Genbank Assembly Accession GCA_900116625.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,535
Refseq Category na
Seq Rel Date 2016/11/02
Spanned Gaps 0
Species Taxid 86102
SSU Count 2
Submitter DOE - JOINT GENOME INSTITUTE
Taxid 86102
Total Gap Length 0
Translation Table 11
tRNA Count (total) 50
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master FPBE00000000.1