Streptomyces harbinensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces harbinensis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces harbinensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces harbinensis
NCBI Strain Identifiers CGMCC 4.7047
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 95.82%
CheckM Contamination 1.18%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 39
N50 Contigs 399,383 bp
Longest Contig 805,910 bp
Scaffold Count 33
N50 Scaffolds 751,957 bp
Longest Scaffold 962,847 bp
Genome Size 5,802,684 bp
Protein Count 5,237
Coding Density 89.94%
GC Percentage 72.99%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name IMG-taxon 2675903139 annotated assembly
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN05444716
Country None
Date 2016-11-02
Genbank Assembly Accession GCA_900116145.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,224
Refseq Category na
Seq Rel Date 2016/11/02
Spanned Gaps 6
Species Taxid 1176198
SSU Count 4
Submitter DOE - JOINT GENOME INSTITUTE
Taxid 1176198
Total Gap Length 3653
Translation Table 11
tRNA Count (total) 56
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master FPAB00000000.1