GTDB Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio toranzoniae |
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Filtered NCBI Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio toranzoniae |
Unfiltered NCBI Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio toranzoniae |
NCBI Strain Identifiers | CECT 7225 |
GTDB Type Material Designation | type strain of species |
GTDB Representative of Species | True (2 genomes in species cluster) |
CheckM Completeness | 99.87% |
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CheckM Contamination | 0.4% |
CheckM Strain Heterogeneity | 0.0 |
5S Count | 10 |
16S Count | 18 |
23S Count | 12 |
tRNA Count | 20 |
Contig Count | 54 |
N50 Contigs | 418,274 bp |
Longest Contig | 948,819 bp |
Scaffold Count | 54 |
N50 Scaffolds | 418,274 bp |
Longest Scaffold | 948,819 bp |
Genome Size | 4,563,366 bp |
Protein Count | 3,982 |
Coding Density | 84.59% |
GC Percentage | 43.93% |
Ambiguous Bases | N/A |
GTDB representative of species | True |
Assembly Level | Contig |
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Assembly Name | VtoranzoniaeCECT7225_SPAdes_Prokka |
Assembly Type | n/a |
Bioproject | PRJNA224116 |
Biosample | SAMEA4016015 |
Country | None |
Date | 2016-6-28 |
Genbank Assembly Accession | GCA_900089765.1 |
Genome Category | Isolate |
Genome Representation | full |
Isolate | None |
Isolation Source | clams of Ruditapes decussatus |
Latitude Longitude | None |
Molecule Count | N/A |
CDS Count | 4,009 |
Refseq Category | representative genome |
Seq Rel Date | 2016/06/28 |
Spanned Gaps | 0 |
Species Taxid | 1194427 |
SSU Count | 27 |
Submitter | UVEG |
Taxid | 1194427 |
Total Gap Length | 0 |
Translation Table | 11 |
tRNA Count (total) | 137 |
Type Material | assembly from type material |
Unspanned Gaps | 0 |
Version Status | latest |
WGS Master | FLOD00000000.1 |