| GTDB Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio toranzoniae |
|---|---|
| Filtered NCBI Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio toranzoniae |
| Unfiltered NCBI Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio toranzoniae |
| NCBI Strain Identifiers | CECT 7225 |
| GTDB Type Material Designation | type strain of species |
| GTDB Representative of Species | True (7 genomes in species cluster) |
| CheckM Completeness | 99.87% |
|---|---|
| CheckM Contamination | 0.4% |
| CheckM Strain Heterogeneity | 0.0 |
| 5S Count | 10 |
| 16S Count | 18 |
| 23S Count | 12 |
| tRNA Count | 20 |
| Contig Count | 54 |
| N50 Contigs | 418,274 bp |
| Longest Contig | 948,819 bp |
| Scaffold Count | 54 |
| N50 Scaffolds | 418,274 bp |
| Longest Scaffold | 948,819 bp |
| Genome Size | 4,563,366 bp |
| Protein Count | 3,982 |
| Coding Density | 84.59% |
| GC Percentage | 43.93% |
| Ambiguous Bases | 0 |
| GTDB representative of species | True |
| Assembly Level | Contig |
|---|---|
| Assembly Name | VtoranzoniaeCECT7225_SPAdes_Prokka |
| Assembly Type | na |
| Bioproject | PRJNA224116 |
| Biosample | SAMEA4016015 |
| Country | None |
| Date | 2016-06-28 |
| Genbank Assembly Accession | GCA_900089765.1 |
| Genome Category | Isolate |
| Genome Representation | full |
| Isolate | None |
| Isolation Source | clams of Ruditapes decussatus |
| Latitude Longitude | None |
| Molecule Count | N/A |
| CDS Count | 3,947 |
| Refseq Category | representative genome |
| Seq Rel Date | 2016/06/28 |
| Spanned Gaps | 0 |
| Species Taxid | 1194427 |
| SSU Count | 27 |
| Submitter | UVEG |
| Taxid | 1194427 |
| Total Gap Length | 0 |
| Translation Table | 11 |
| tRNA Count (total) | 136 |
| Type Material | assembly from type material |
| Unspanned Gaps | 0 |
| Version Status | latest |
| WGS Master | FLOD00000000.1 |