Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers Bpst24
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 257
N50 Contigs 23,014 bp
Longest Contig 120,541 bp
Scaffold Count 249
N50 Scaffolds 23,177 bp
Longest Scaffold 120,541 bp
Genome Size 3,857,563 bp
Protein Count 3,733
Coding Density 89.46%
GC Percentage 67.81%
Ambiguous Bases 1
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name NeoBp6
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3871515
Country None
Date 2016-2-25
Genbank Assembly Accession GCA_900067265.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,651
Refseq Category na
Seq Rel Date 2016/02/25
Spanned Gaps 8
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 1208
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master FJMX00000000.1