Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 2690STDY5561685
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.82%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 34
N50 Contigs 114,940 bp
Longest Contig 316,476 bp
Scaffold Count 34
N50 Scaffolds 114,940 bp
Longest Scaffold 316,476 bp
Genome Size 2,074,976 bp
Protein Count 2,081
Coding Density 86.04%
GC Percentage 39.62%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 10678_7#67
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2152036
Country United Kingdom: England
Date 2016-2-12
Genbank Assembly Accession GCA_900061875.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,239
Refseq Category na
Seq Rel Date 2016/02/12
Spanned Gaps 0
Species Taxid 1313
SSU Count 2
Submitter SC
Taxid 1313
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master FIBE00000000.1