Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 2245STDY5804506
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.09%
CheckM Contamination 2.69%
CheckM Strain Heterogeneity 88.24
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 457
N50 Contigs 42,072 bp
Longest Contig 143,175 bp
Scaffold Count 339
N50 Scaffolds 74,287 bp
Longest Scaffold 315,946 bp
Genome Size 2,197,451 bp
Protein Count 2,365
Coding Density 83.48%
GC Percentage 39.60%
Ambiguous Bases 5
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 13154_3#58
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2467737
Country None
Date 2016-2-13
Genbank Assembly Accession GCA_900054745.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,584
Refseq Category na
Seq Rel Date 2016/02/13
Spanned Gaps 118
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 22760
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master FHNU00000000.1