Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers D28531
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.81%
CheckM Contamination 0.53%
CheckM Strain Heterogeneity 66.67
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 26
N50 Contigs 163,014 bp
Longest Contig 487,480 bp
Scaffold Count 26
N50 Scaffolds 163,014 bp
Longest Scaffold 487,480 bp
Genome Size 2,028,684 bp
Protein Count 2,026
Coding Density 86.02%
GC Percentage 39.72%
Ambiguous Bases 7
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 4564_2#2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA867950
Country None
Date 2016-2-12
Genbank Assembly Accession GCA_900052885.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,179
Refseq Category na
Seq Rel Date 2016/02/12
Spanned Gaps 0
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 0
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master FIWK00000000.1