Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhi
NCBI Strain Identifiers 3135STDY5861322
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.38%
CheckM Contamination 0.07%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 72
N50 Contigs 144,769 bp
Longest Contig 330,619 bp
Scaffold Count 52
N50 Scaffolds 204,297 bp
Longest Scaffold 480,057 bp
Genome Size 4,912,432 bp
Protein Count 4,802
Coding Density 86.68%
GC Percentage 51.89%
Ambiguous Bases 1
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 13566_1#42
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2603163
Country Nigeria:Outskirts of Abuja
Date 2016-2-11
Genbank Assembly Accession GCA_900044755.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude None
Molecule Count N/A
CDS Count 5,042
Refseq Category na
Seq Rel Date 2016/02/11
Spanned Gaps 20
Species Taxid 28901
SSU Count 2
Submitter SC
Taxid 90370
Total Gap Length 5284
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master FFLF00000000.1