Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 2842STDY5644615
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.18%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 48
N50 Contigs 78,906 bp
Longest Contig 234,987 bp
Scaffold Count 42
N50 Scaffolds 138,359 bp
Longest Scaffold 334,688 bp
Genome Size 2,058,955 bp
Protein Count 2,050
Coding Density 85.80%
GC Percentage 39.62%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 11861_5#4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2239232
Country None
Date 2016-2-10
Genbank Assembly Accession GCA_900044255.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,200
Refseq Category na
Seq Rel Date 2016/02/10
Spanned Gaps 6
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 1414
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master FDTU00000000.1