Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 2842STDY5753406
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.6%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 50
N50 Contigs 71,711 bp
Longest Contig 294,086 bp
Scaffold Count 36
N50 Scaffolds 108,186 bp
Longest Scaffold 326,249 bp
Genome Size 2,101,214 bp
Protein Count 2,105
Coding Density 85.67%
GC Percentage 39.56%
Ambiguous Bases 8
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 12718_5#33
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2382863
Country None
Date 2016-2-8
Genbank Assembly Accession GCA_900043075.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,286
Refseq Category na
Seq Rel Date 2016/02/08
Spanned Gaps 14
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 3231
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master FDJL00000000.1