Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 2842STDY5753670
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 44
N50 Contigs 87,389 bp
Longest Contig 252,384 bp
Scaffold Count 39
N50 Scaffolds 104,790 bp
Longest Scaffold 327,290 bp
Genome Size 2,043,699 bp
Protein Count 2,028
Coding Density 85.77%
GC Percentage 39.66%
Ambiguous Bases 1
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 12754_3#9
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2383124
Country None
Date 2016-2-10
Genbank Assembly Accession GCA_900028965.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,194
Refseq Category na
Seq Rel Date 2016/02/10
Spanned Gaps 5
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 1080
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master FEIQ00000000.1