Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 2842STDY5753533
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.34%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 36
N50 Contigs 86,237 bp
Longest Contig 267,442 bp
Scaffold Count 26
N50 Scaffolds 132,841 bp
Longest Scaffold 271,513 bp
Genome Size 1,978,863 bp
Protein Count 1,949
Coding Density 85.86%
GC Percentage 39.73%
Ambiguous Bases 7
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 12754_1#64
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2382989
Country None
Date 2016-2-8
Genbank Assembly Accession GCA_900028875.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,120
Refseq Category na
Seq Rel Date 2016/02/08
Spanned Gaps 10
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 2536
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master FDOB00000000.1