Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 2842STDY5753339
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.6%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 71
N50 Contigs 54,882 bp
Longest Contig 147,186 bp
Scaffold Count 58
N50 Scaffolds 81,567 bp
Longest Scaffold 147,186 bp
Genome Size 2,066,509 bp
Protein Count 2,085
Coding Density 85.66%
GC Percentage 39.68%
Ambiguous Bases 4
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 12718_4#62
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2382797
Country None
Date 2016-2-8
Genbank Assembly Accession GCA_900028365.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,240
Refseq Category na
Seq Rel Date 2016/02/08
Spanned Gaps 13
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 3668
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master FDHD00000000.1