Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 2842STDY5753151
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.6%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 38
N50 Contigs 82,729 bp
Longest Contig 243,441 bp
Scaffold Count 30
N50 Scaffolds 109,355 bp
Longest Scaffold 243,441 bp
Genome Size 2,015,239 bp
Protein Count 1,985
Coding Density 86.18%
GC Percentage 39.62%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 12673_6#66
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2382611
Country None
Date 2016-2-8
Genbank Assembly Accession GCA_900027645.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,158
Refseq Category na
Seq Rel Date 2016/02/08
Spanned Gaps 8
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 1919
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master FDAB00000000.1