Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 2842STDY5644012
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.72%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 45
N50 Contigs 74,234 bp
Longest Contig 260,865 bp
Scaffold Count 35
N50 Scaffolds 98,161 bp
Longest Scaffold 267,783 bp
Genome Size 2,060,044 bp
Protein Count 2,054
Coding Density 85.90%
GC Percentage 39.51%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 11861_1#78
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2238640
Country None
Date 2016-2-10
Genbank Assembly Accession GCA_900025825.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,224
Refseq Category na
Seq Rel Date 2016/02/10
Spanned Gaps 10
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 2385
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master FEDP00000000.1