Propionibacterium freudenreichii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Propionibacteriales; f__Propionibacteriaceae; g__Propionibacterium; s__Propionibacterium freudenreichii
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Propionibacteriales; f__Propionibacteriaceae; g__Propionibacterium; s__Propionibacterium freudenreichii
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Propionibacteriales; f__Propionibacteriaceae; g__Propionibacterium; s__Propionibacterium freudenreichii
NCBI Strain Identifiers CIRM-BIA 121
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000940845.1)
Genome Characteristics
CheckM Completeness 98.79%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 127
N50 Contigs 46,792 bp
Longest Contig 179,232 bp
Scaffold Count 59
N50 Scaffolds 86,244 bp
Longest Scaffold 251,958 bp
Genome Size 2,561,530 bp
Protein Count 2,247
Coding Density 87.92%
GC Percentage 67.35%
Ambiguous Bases N/A
GTDB representative GCA_000940845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name CIRM-BIA121
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2822392
Country None
Date 2014-12-11
Genbank Assembly Accession GCA_900000125.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,212
Refseq Category na
Seq Rel Date 2014/12/11
Spanned Gaps 68
Species Taxid 1744
SSU Count 1
Submitter INRA STLO
Taxid 1744
Total Gap Length 2332
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CCYR00000000.1