Xanthomonas oryzae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas oryzae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas oryzae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas oryzae; x__Xanthomonas oryzae pv. oryzae
NCBI Strain Identifiers ICMP3125
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (352 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 1
N50 Contigs 4,990,672 bp
Longest Contig 4,990,672 bp
Scaffold Count 1
N50 Scaffolds 4,990,672 bp
Longest Scaffold 4,990,672 bp
Genome Size 4,990,672 bp
Protein Count 4,762
Coding Density 85.44%
GC Percentage 63.69%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM413637v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN09791860
Country None
Date 2019-02-04
Genbank Assembly Accession GCA_004136375.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 4,816
Refseq Category na
Seq Rel Date 2019/02/04
Spanned Gaps 0
Species Taxid 347
SSU Count 2
Submitter Martin Luther University Halle-Wittenberg
Taxid 64187
Total Gap Length 0
Translation Table 11
tRNA Count (total) 53
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None