Diaphorobacter nitroreducens
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Diaphorobacter; s__Diaphorobacter nitroreducens
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Diaphorobacter; s__Diaphorobacter nitroreducens
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Diaphorobacter; s__Diaphorobacter nitroreducens
NCBI Strain Identifiers DSM 15985
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (12 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.9%
CheckM Contamination 0.15%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 16
N50 Contigs 456,305 bp
Longest Contig 857,111 bp
Scaffold Count 16
N50 Scaffolds 456,305 bp
Longest Scaffold 857,111 bp
Genome Size 3,654,005 bp
Protein Count 3,367
Coding Density 90.18%
GC Percentage 66.84%
Ambiguous Bases 7
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM375502v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN10362780
Country None
Date 2018-11-15
Genbank Assembly Accession GCA_003755025.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,391
Refseq Category na
Seq Rel Date 2018/11/15
Spanned Gaps 0
Species Taxid 164759
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 164759
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master RJVL00000000.1