Pseudoxanthomonas_A spadix
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Pseudoxanthomonas_A; s__Pseudoxanthomonas_A spadix
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Pseudoxanthomonas; s__Pseudoxanthomonas spadix
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Pseudoxanthomonas; s__Pseudoxanthomonas spadix
NCBI Strain Identifiers DSM 18855
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.97%
CheckM Contamination 0.59%
CheckM Strain Heterogeneity 20.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 26
N50 Contigs 450,344 bp
Longest Contig 567,592 bp
Scaffold Count 26
N50 Scaffolds 450,344 bp
Longest Scaffold 567,592 bp
Genome Size 3,374,414 bp
Protein Count 3,023
Coding Density 88.23%
GC Percentage 67.76%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM370339v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN10232480
Country None
Date 2018-10-30
Genbank Assembly Accession GCA_003703395.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,044
Refseq Category na
Seq Rel Date 2018/10/30
Spanned Gaps 0
Species Taxid 415229
SSU Count 1
Submitter National Microbiology Laboratory
Taxid 415229
Total Gap Length 0
Translation Table 11
tRNA Count (total) 48
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master RDQN00000000.1