Sphingomonas_E fennica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas_E; s__Sphingomonas_E fennica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas fennica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas fennica
NCBI Strain Identifiers K101
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.55%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 89
N50 Contigs 97,465 bp
Longest Contig 355,170 bp
Scaffold Count 89
N50 Scaffolds 97,465 bp
Longest Scaffold 355,170 bp
Genome Size 4,494,276 bp
Protein Count 4,363
Coding Density 89.98%
GC Percentage 66.78%
Ambiguous Bases 14
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM303422v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN08056112
Country None
Date 2018-4-4
Genbank Assembly Accession GCA_003034225.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,351
Refseq Category na
Seq Rel Date 2018/04/04
Spanned Gaps 0
Species Taxid 114404
SSU Count 1
Submitter China Agricultural University
Taxid 114404
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master PHHF00000000.1