Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella flexneri
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella flexneri; x__Shigella flexneri 2a
NCBI Strain Identifiers ATCC 29903
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (12,267 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.7%
CheckM Contamination 1.17%
CheckM Strain Heterogeneity 30.77
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 3
N50 Contigs 4,659,463 bp
Longest Contig 4,659,463 bp
Scaffold Count 3
N50 Scaffolds 4,659,463 bp
Longest Scaffold 4,659,463 bp
Genome Size 4,938,295 bp
Protein Count 5,114
Coding Density 86.10%
GC Percentage 50.67%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM295021v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN08330274
Country None
Date 2018-02-26
Genbank Assembly Accession GCA_002950215.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 3
CDS Count 5,081
Refseq Category na
Seq Rel Date 2018/02/26
Spanned Gaps 0
Species Taxid 623
SSU Count 7
Submitter CDC
Taxid 42897
Total Gap Length 0
Translation Table 11
tRNA Count (total) 104
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None