Pseudomonas_E syringae_M
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E syringae_M
Filtered NCBI Taxonomy d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae
NCBI Strain Identifiers Pss9630
GTDB Type Material Designation not type material
GTDB Representative of Species True (57 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 57
N50 Contigs 347,701 bp
Longest Contig 1,085,604 bp
Scaffold Count 57
N50 Scaffolds 347,701 bp
Longest Scaffold 1,085,604 bp
Genome Size 5,940,819 bp
Protein Count 5,135
Coding Density 88.09%
GC Percentage 59.33%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM290599v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN05861174
Country None
Date 2018-1-29
Genbank Assembly Accession GCA_002905995.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,389
Refseq Category na
Seq Rel Date 2018/01/29
Spanned Gaps 0
Species Taxid 317
SSU Count 3
Submitter NIAB East Malling Research
Taxid 321
Total Gap Length 0
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master MLER00000000.1