Lactobacillus_F paraplantarum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus_F; s__Lactobacillus_F paraplantarum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus paraplantarum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus paraplantarum
NCBI Strain Identifiers D2-1
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.38%
CheckM Contamination 3.09%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 6
23S Count 5
tRNA Count 20
Contig Count 123
N50 Contigs 93,596 bp
Longest Contig 367,276 bp
Scaffold Count 98
N50 Scaffolds 118,286 bp
Longest Scaffold 540,462 bp
Genome Size 3,521,459 bp
Protein Count 3,440
Coding Density 82.20%
GC Percentage 43.56%
Ambiguous Bases 0
GTDB representative GCF_001435655.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM289717v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00076650
Country None
Date 2018-1-11
Genbank Assembly Accession GCA_002897175.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 0
Protein Count 3,487
Refseq Category na
Seq Rel Date 2018/01/11
Spanned Gaps 25
Species Taxid 60520
SSU Count 8
Submitter Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture
Taxid 60520
Total Gap Length 5393
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BDOR00000000.1