Pseudomonas_E putida_A
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E putida_A
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas putida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas putida group; s__Pseudomonas putida
NCBI Strain Identifiers FDAARGOS_376
GTDB Type Material Designation not type material
GTDB Representative of Species True
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.29%
CheckM Strain Heterogeneity 25.0
5S Count 6
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 3
N50 Contigs 6,223,256 bp
Longest Contig 6,223,256 bp
Scaffold Count 3
N50 Scaffolds 6,223,256 bp
Longest Scaffold 6,223,256 bp
Genome Size 6,273,541 bp
Protein Count 5,556
Coding Density 87.71%
GC Percentage 60.14%
Ambiguous Bases 0
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM258848v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN07312420
Country None
Date 2017-10-18
Genbank Assembly Accession GCA_002588485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 0
Protein Count 5,602
Refseq Category na
Seq Rel Date 2017/10/18
Spanned Gaps 0
Species Taxid 303
SSU Count 6
Submitter University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Taxid 303
Total Gap Length 0
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master PDKZ00000000.1