Pseudomonas_E putida_A
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E putida_A
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas fluorescens
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas fluorescens group; s__Pseudomonas fluorescens
NCBI Strain Identifiers CH229
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.32%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 89
N50 Contigs 133,957 bp
Longest Contig 415,672 bp
Scaffold Count 89
N50 Scaffolds 133,957 bp
Longest Scaffold 415,672 bp
Genome Size 6,047,904 bp
Protein Count 5,384
Coding Density 88.30%
GC Percentage 60.29%
Ambiguous Bases 0
GTDB representative GCF_002588485.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM240762v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN07703429
Country None
Date 2017-10-2
Genbank Assembly Accession GCA_002407625.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 0
Protein Count 5,415
Refseq Category na
Seq Rel Date 2017/10/02
Spanned Gaps 0
Species Taxid 294
SSU Count 1
Submitter University of British Columbia
Taxid 294
Total Gap Length 0
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master NXHE00000000.1