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GCF_002207995.1

Pantoea dispersa

Isolate

HQ

5S/16S/23S

20 tRNAs

All Taxonomic Information Genome Characteristics NCBI Metadata Taxon History

Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Pantoea; s__Pantoea dispersa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Erwiniaceae; g__Pantoea; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Erwiniaceae; g__Pantoea; s__Pantoea sp. VS1
NCBI Strain Identifiers VS1
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.98%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 3
23S Count 9
tRNA Count 20
Contig Count 191
N50 Contigs 151,591 bp
Longest Contig 601,327 bp
Scaffold Count 191
N50 Scaffolds 151,591 bp
Longest Scaffold 601,327 bp
Genome Size 5,412,831 bp
Protein Count 5,079
Coding Density 87.07%
GC Percentage 57.29%
Ambiguous Bases 0
GTDB representative GCF_000465555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM220799v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN07150515
Country None
Date 2017-6-26
Genbank Assembly Accession GCA_002207995.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 0
Protein Count 5,064
Refseq Category na
Seq Rel Date 2017/06/26
Spanned Gaps 0
Species Taxid 2003658
SSU Count 8
Submitter University of Central Florida
Taxid 2003658
Total Gap Length 0
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master NHZE00000000.1
Taxon History

CheckM Information

CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. It provides robust estimates of genome completeness and contamination by using collocated sets of genes that are ubiquitous and single-copy within a phylogenetic lineage. Assessment of genome quality can also be examined using plots depicting key genomic characteristics (e.g., GC, coding density) which highlight sequences outside the expected distributions of a typical genome. CheckM also provides tools for identifying genome bins that are likely candidates for merging based on marker set compatibility, similarity in genomic characteristics, and proximity within a reference genome tree.

For more information, please check the CheckM Wiki page.

Rank Information

d__ = Domain
p__ = Phylum
c__ = Class
o__ = Order
f__ = Family
g__ = Genus
s__ = Species
st__ = Strain
x__ = No rank

The NCBI taxonomy is as described in the current RefSeq release used by GTDB, which may not be the latest RefSeq release available at the NCBI website.

NCBI Information

The information on this table has been parsed from the NCBI FTP website.

Go to the NCBI Page