Lactobacillus crispatus
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus crispatus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus crispatus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus crispatus
NCBI Strain Identifiers ATCC 33820
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (98 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.03%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 130
N50 Contigs 32,277 bp
Longest Contig 81,313 bp
Scaffold Count 129
N50 Scaffolds 32,277 bp
Longest Scaffold 81,313 bp
Genome Size 2,069,542 bp
Protein Count 2,055
Coding Density 87.61%
GC Percentage 36.63%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM208801v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN06624125
Country None
Date 2017-4-12
Genbank Assembly Accession GCA_002088015.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,062
Refseq Category na
Seq Rel Date 2017/04/12
Spanned Gaps 1
Species Taxid 47770
SSU Count 1
Submitter Loyola University Chicago
Taxid 47770
Total Gap Length 376
Translation Table 11
tRNA Count (total) 60
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master NARH00000000.1