Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio campbellii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio campbellii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio campbellii
NCBI Strain Identifiers VIB391
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.17%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 15
Contig Count 82
N50 Contigs 260,024 bp
Longest Contig 1,040,478 bp
Scaffold Count 82
N50 Scaffolds 260,024 bp
Longest Scaffold 1,040,478 bp
Genome Size 5,686,905 bp
Protein Count 5,086
Coding Density 86.91%
GC Percentage 45.43%
Ambiguous Bases 0
GTDB representative GCF_002163755.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Vibrio harveyi strain VIB391
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN05933183
Country None
Date 2017-4-3
Genbank Assembly Accession GCA_002078065.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 0
Protein Count 5,162
Refseq Category na
Seq Rel Date 2017/04/03
Spanned Gaps 0
Species Taxid 680
SSU Count 1
Submitter University of Copenhagen
Taxid 680
Total Gap Length 0
Translation Table 11
tRNA Count (total) 69
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master MNLF00000000.1