Xanthomonas perforans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas perforans
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas perforans
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas perforans
NCBI Strain Identifiers CFBP 7293
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (198 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.64%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 3
tRNA Count 20
Contig Count 32
N50 Contigs 508,791 bp
Longest Contig 1,322,709 bp
Scaffold Count 32
N50 Scaffolds 508,791 bp
Longest Scaffold 1,322,709 bp
Genome Size 5,012,988 bp
Protein Count 4,215
Coding Density 86.05%
GC Percentage 64.93%
Ambiguous Bases 3
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM197607v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN05938607
Country None
Date 2017-1-31
Genbank Assembly Accession GCA_001976075.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,403
Refseq Category na
Seq Rel Date 2017/01/31
Spanned Gaps 0
Species Taxid 442694
SSU Count 2
Submitter INRA
Taxid 442694
Total Gap Length 0
Translation Table 11
tRNA Count (total) 54
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master MOLQ00000000.1