Apilactobacillus kunkeei_A
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Apilactobacillus; s__Apilactobacillus kunkeei_A
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus kunkeei
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus kunkeei
NCBI Strain Identifiers FF30-6
GTDB Type Material Designation not type material
GTDB Representative of Species True (10 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.07%
CheckM Contamination 0.62%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 26
N50 Contigs 165,447 bp
Longest Contig 245,214 bp
Scaffold Count 25
N50 Scaffolds 165,447 bp
Longest Scaffold 245,214 bp
Genome Size 1,580,411 bp
Protein Count 1,457
Coding Density 90.16%
GC Percentage 36.81%
Ambiguous Bases 8
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM194997v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00051448
Country None
Date 2016-5-13
Genbank Assembly Accession GCA_001949975.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,447
Refseq Category na
Seq Rel Date 2016/05/13
Spanned Gaps 1
Species Taxid 148814
SSU Count 2
Submitter Laboratory of Applied Microbiology, Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture
Taxid 148814
Total Gap Length 64
Translation Table 11
tRNA Count (total) 60
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BDDX00000000.1