Pasteurella multocida
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
NCBI Strain Identifiers 69APM;swab isolate 2
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.43%
CheckM Contamination 0.23%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 33
N50 Contigs 174,685 bp
Longest Contig 500,062 bp
Scaffold Count 31
N50 Scaffolds 174,685 bp
Longest Scaffold 500,062 bp
Genome Size 2,294,116 bp
Protein Count 2,126
Coding Density 89.42%
GC Percentage 40.25%
Ambiguous Bases 0
GTDB representative GCF_000754275.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM193114v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04366587
Country USA: California; Feedlot
Date 2017-1-4
Genbank Assembly Accession GCA_001931145.1
Genome Category Isolate
Genome Representation full
Isolate swab isolate 2
Isolation Source nasopharyngeal
Latitude Longitude None
Molecule Count 0
Protein Count 2,107
Refseq Category na
Seq Rel Date 2017/01/04
Spanned Gaps 2
Species Taxid 747
SSU Count 1
Submitter University of California, Davis
Taxid 747
Total Gap Length 686
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQGN00000000.1