Pasteurella multocida
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
NCBI Strain Identifiers swab isolate 1;3275PM
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.43%
CheckM Contamination 0.23%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 33
N50 Contigs 174,685 bp
Longest Contig 500,007 bp
Scaffold Count 31
N50 Scaffolds 174,685 bp
Longest Scaffold 500,007 bp
Genome Size 2,293,925 bp
Protein Count 2,125
Coding Density 89.42%
GC Percentage 40.25%
Ambiguous Bases 0
GTDB representative GCF_000754275.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM193087v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04366567
Country USA: California; Dairy
Date 2017-1-4
Genbank Assembly Accession GCA_001930875.1
Genome Category Isolate
Genome Representation full
Isolate swab isolate 1
Isolation Source nasopharyngeal
Latitude Longitude None
Molecule Count 0
Protein Count 2,106
Refseq Category na
Seq Rel Date 2017/01/04
Spanned Gaps 2
Species Taxid 747
SSU Count 1
Submitter University of California, Davis
Taxid 747
Total Gap Length 692
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQFT00000000.1