Pasteurella multocida
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
NCBI Strain Identifiers 3022PM;swab isolate 1
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.47%
CheckM Contamination 0.23%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 34
N50 Contigs 195,215 bp
Longest Contig 333,097 bp
Scaffold Count 33
N50 Scaffolds 195,215 bp
Longest Scaffold 333,097 bp
Genome Size 2,416,171 bp
Protein Count 2,287
Coding Density 89.42%
GC Percentage 40.24%
Ambiguous Bases 0
GTDB representative GCF_000754275.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM193070v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04366557
Country USA: California; Dairy
Date 2017-1-4
Genbank Assembly Accession GCA_001930705.1
Genome Category Isolate
Genome Representation full
Isolate swab isolate 1
Isolation Source nasopharyngeal
Latitude Longitude None
Molecule Count 0
Protein Count 2,270
Refseq Category na
Seq Rel Date 2017/01/04
Spanned Gaps 1
Species Taxid 747
SSU Count 1
Submitter University of California, Davis
Taxid 747
Total Gap Length 440
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQFJ00000000.1