Pasteurella multocida
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
NCBI Strain Identifiers swab isolate 1;2297PM
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.55%
CheckM Contamination 0.23%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 31
N50 Contigs 200,161 bp
Longest Contig 509,186 bp
Scaffold Count 29
N50 Scaffolds 200,161 bp
Longest Scaffold 509,186 bp
Genome Size 2,293,007 bp
Protein Count 2,124
Coding Density 89.45%
GC Percentage 40.25%
Ambiguous Bases 0
GTDB representative GCF_000754275.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM193011v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04366507
Country USA: California; Dairy
Date 2017-1-4
Genbank Assembly Accession GCA_001930115.1
Genome Category Isolate
Genome Representation full
Isolate swab isolate 1
Isolation Source nasopharyngeal
Latitude Longitude None
Molecule Count 0
Protein Count 2,104
Refseq Category na
Seq Rel Date 2017/01/04
Spanned Gaps 2
Species Taxid 747
SSU Count 1
Submitter University of California, Davis
Taxid 747
Total Gap Length 455
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQDL00000000.1