Aeromonas salmonicida
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Aeromonadaceae; g__Aeromonas; s__Aeromonas salmonicida
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Aeromonadales; f__Aeromonadaceae; g__Aeromonas; s__Aeromonas salmonicida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Aeromonadales; f__Aeromonadaceae; g__Aeromonas; s__Aeromonas salmonicida; sb__Aeromonas salmonicida subsp. salmonicida
NCBI Strain Identifiers JF3517
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.58%
CheckM Strain Heterogeneity 100.0
5S Count 9
16S Count 5
23S Count 2
tRNA Count 20
Contig Count 132
N50 Contigs 103,491 bp
Longest Contig 382,476 bp
Scaffold Count 132
N50 Scaffolds 103,491 bp
Longest Scaffold 382,476 bp
Genome Size 4,935,136 bp
Protein Count 4,830
Coding Density 86.34%
GC Percentage 58.26%
Ambiguous Bases 103
GTDB representative GCF_001643305.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM190212v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN05728472
Country Norway
Date 2016-12-13
Genbank Assembly Accession GCA_001902125.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 0
Protein Count 4,689
Refseq Category na
Seq Rel Date 2016/12/13
Spanned Gaps 0
Species Taxid 645
SSU Count 11
Submitter Universite Laval
Taxid 29491
Total Gap Length 0
Translation Table 11
tRNA Count (total) 101
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master MIIU00000000.1