Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio sonorensis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio sonorensis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio sonorensis
NCBI Strain Identifiers CAIM 1076
GTDB Type Material Designation type strain of species
GTDB Representative of Species True
Genome Characteristics
CheckM Completeness 97.73%
CheckM Contamination 2.74%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 18
Contig Count 138
N50 Contigs 189,594 bp
Longest Contig 413,688 bp
Scaffold Count 138
N50 Scaffolds 189,594 bp
Longest Scaffold 413,688 bp
Genome Size 4,767,843 bp
Protein Count 5,070
Coding Density 87.08%
GC Percentage 44.35%
Ambiguous Bases 0
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM185476v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04029016
Country Mexico
Date 2016-10-26
Genbank Assembly Accession GCA_001854765.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source seawater
Latitude Longitude 31.19 N 113.32 W
Molecule Count 0
Protein Count 4,566
Refseq Category representative genome
Seq Rel Date 2016/10/26
Spanned Gaps 0
Species Taxid 1004316
SSU Count 1
Submitter CIAD, A.C. Mazatlan Unit for Aquaculture
Taxid 1004316
Total Gap Length 0
Translation Table 11
tRNA Count (total) 59
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LJJE00000000.1