Streptococcus salivarius
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus salivarius
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus sp. HMSC078H12
NCBI Strain Identifiers HMSC078H12
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.26%
CheckM Contamination 0.15%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 18
Contig Count 87
N50 Contigs 79,031 bp
Longest Contig 176,656 bp
Scaffold Count 46
N50 Scaffolds 235,662 bp
Longest Scaffold 580,377 bp
Genome Size 2,124,975 bp
Protein Count 1,955
Coding Density 87.23%
GC Percentage 40.02%
Ambiguous Bases 0
GTDB representative GCF_000785515.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM181461v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04480405
Country None
Date 2016-10-21
Genbank Assembly Accession GCA_001814615.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude None
Molecule Count 0
Protein Count 1,974
Refseq Category na
Seq Rel Date 2016/10/21
Spanned Gaps 41
Species Taxid 1739483
SSU Count 2
Submitter The Genome Institute at Washington University
Taxid 1739483
Total Gap Length 4100
Translation Table 11
tRNA Count (total) 33
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LTUM00000000.1