Streptococcus salivarius
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus salivarius
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus sp. HMSC072D03
NCBI Strain Identifiers HMSC072D03
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.88%
CheckM Contamination 0.29%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 2
tRNA Count 17
Contig Count 153
N50 Contigs 38,162 bp
Longest Contig 104,233 bp
Scaffold Count 97
N50 Scaffolds 79,697 bp
Longest Scaffold 256,608 bp
Genome Size 2,242,094 bp
Protein Count 2,079
Coding Density 85.93%
GC Percentage 39.49%
Ambiguous Bases 0
GTDB representative GCF_000785515.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM181285v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04480045
Country None
Date 2016-10-21
Genbank Assembly Accession GCA_001812855.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source vaginal/rectal
Latitude Longitude None
Molecule Count 0
Protein Count 2,080
Refseq Category na
Seq Rel Date 2016/10/21
Spanned Gaps 56
Species Taxid 1739381
SSU Count 3
Submitter The Genome Institute at Washington University
Taxid 1739381
Total Gap Length 5600
Translation Table 11
tRNA Count (total) 33
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LWQK00000000.1