Streptococcus salivarius
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus salivarius
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus sp. HMSC078H03
NCBI Strain Identifiers HMSC078H03
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.9%
CheckM Contamination 1.02%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 95
N50 Contigs 88,179 bp
Longest Contig 170,046 bp
Scaffold Count 55
N50 Scaffolds 167,699 bp
Longest Scaffold 363,752 bp
Genome Size 2,134,256 bp
Protein Count 1,959
Coding Density 86.74%
GC Percentage 39.99%
Ambiguous Bases 0
GTDB representative GCF_000785515.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM180865v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04477505
Country None
Date 2016-10-21
Genbank Assembly Accession GCA_001808655.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source left great toe
Latitude Longitude None
Molecule Count 0
Protein Count 1,993
Refseq Category na
Seq Rel Date 2016/10/21
Spanned Gaps 40
Species Taxid 1715086
SSU Count 1
Submitter The Genome Institute at Washington University
Taxid 1715086
Total Gap Length 4000
Translation Table 11
tRNA Count (total) 34
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LTLF00000000.1