Croceicoccus pelagius
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Croceicoccus; s__Croceicoccus pelagius
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Erythrobacteraceae; g__Croceicoccus; s__Croceicoccus pelagius
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Erythrobacteraceae; g__Croceicoccus; s__Croceicoccus pelagius
NCBI Strain Identifiers Ery9
GTDB Type Material Designation type strain of species
GTDB Representative of Species True
Genome Characteristics
CheckM Completeness 99.29%
CheckM Contamination 0.52%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 41
N50 Contigs 371,078 bp
Longest Contig 586,724 bp
Scaffold Count 40
N50 Scaffolds 376,029 bp
Longest Scaffold 586,724 bp
Genome Size 3,306,530 bp
Protein Count 3,202
Coding Density 90.33%
GC Percentage 62.81%
Ambiguous Bases 0
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM166191v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN05176186
Country Atlantic Ocean
Date 2016-6-13
Genbank Assembly Accession GCA_001661915.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source seawater
Latitude Longitude 24.16 S 5.48 E
Molecule Count 0
Protein Count 3,138
Refseq Category representative genome
Seq Rel Date 2016/06/13
Spanned Gaps 1
Species Taxid 1703341
SSU Count 3
Submitter Second Institute of Oceanography, State Oceanic Administration
Taxid 1703341
Total Gap Length 52
Translation Table 11
tRNA Count (total) 51
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LYWY00000000.1