Pasteurella multocida
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida; sb__Pasteurella multocida subsp. septica
NCBI Strain Identifiers HB02
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.55%
CheckM Contamination 0.23%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 4
tRNA Count 20
Contig Count 46
N50 Contigs 139,314 bp
Longest Contig 255,515 bp
Scaffold Count 46
N50 Scaffolds 139,314 bp
Longest Scaffold 255,515 bp
Genome Size 2,213,604 bp
Protein Count 2,045
Coding Density 90.11%
GC Percentage 40.27%
Ambiguous Bases 0
GTDB representative GCF_000754275.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM166158v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04918751
Country China: Hubei Province
Date 2016-6-10
Genbank Assembly Accession GCA_001661585.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source lung of a duck that died of fowl cholera
Latitude Longitude 30.5466 N 114.34169999999995 E
Molecule Count 0
Protein Count 2,029
Refseq Category na
Seq Rel Date 2016/06/10
Spanned Gaps 0
Species Taxid 747
SSU Count 1
Submitter Chinese National Human Genome Center at Shanghai
Taxid 115545
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LYOX00000000.1