Lactobacillus_F paraplantarum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus_F; s__Lactobacillus_F paraplantarum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus plantarum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus plantarum
NCBI Strain Identifiers MPL16
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.07%
CheckM Contamination 3.09%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 166
N50 Contigs 63,959 bp
Longest Contig 260,476 bp
Scaffold Count 166
N50 Scaffolds 63,959 bp
Longest Scaffold 260,476 bp
Genome Size 3,278,495 bp
Protein Count 3,225
Coding Density 83.28%
GC Percentage 43.60%
Ambiguous Bases 81
GTDB representative GCF_001435655.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM166064v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04543542
Country Japan: Sendai
Date 2016-6-9
Genbank Assembly Accession GCA_001660645.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Porcine feces
Latitude Longitude None
Molecule Count 0
Protein Count 3,233
Refseq Category na
Seq Rel Date 2016/06/09
Spanned Gaps 0
Species Taxid 1590
SSU Count 4
Submitter CERELA-CONICET
Taxid 1590
Total Gap Length 0
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LUHN00000000.1