Aeromonas salmonicida
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Aeromonadaceae; g__Aeromonas; s__Aeromonas salmonicida
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Aeromonadales; f__Aeromonadaceae; g__Aeromonas; s__Aeromonas salmonicida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Aeromonadales; f__Aeromonadaceae; g__Aeromonas; s__Aeromonas salmonicida; sb__Aeromonas salmonicida subsp. salmonicida
NCBI Strain Identifiers J231
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.58%
CheckM Strain Heterogeneity 100.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 143
N50 Contigs 99,705 bp
Longest Contig 309,980 bp
Scaffold Count 143
N50 Scaffolds 99,705 bp
Longest Scaffold 309,980 bp
Genome Size 4,746,942 bp
Protein Count 4,555
Coding Density 86.63%
GC Percentage 58.42%
Ambiguous Bases 0
GTDB representative GCF_001643305.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM164328v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04450001
Country Chile: Microbial Pathogenesis and Vaccinology Laboratory; Huechuraba
Date 2016-5-13
Genbank Assembly Accession GCA_001643285.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Aeromonas salmonicida J223 after thermal Shock
Latitude Longitude None
Molecule Count 0
Protein Count 4,422
Refseq Category na
Seq Rel Date 2016/05/13
Spanned Gaps 0
Species Taxid 645
SSU Count 1
Submitter Universidad Mayor
Taxid 29491
Total Gap Length 0
Translation Table 11
tRNA Count (total) 87
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LSGY00000000.1