Pseudomonas_E viridiflava
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E viridiflava
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas viridiflava
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; s__Pseudomonas viridiflava
NCBI Strain Identifiers ICMP 2848
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1,357 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.15%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 3
tRNA Count 19
Contig Count 90
N50 Contigs 190,487 bp
Longest Contig 362,997 bp
Scaffold Count 48
N50 Scaffolds 453,916 bp
Longest Scaffold 573,694 bp
Genome Size 5,918,918 bp
Protein Count 5,282
Coding Density 88.39%
GC Percentage 59.39%
Ambiguous Bases 278
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM164279v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04102828
Country Switzerland
Date 2016-5-12
Genbank Assembly Accession GCA_001642795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,279
Refseq Category na
Seq Rel Date 2016/05/12
Spanned Gaps 42
Species Taxid 33069
SSU Count 2
Submitter New Zealand Institute for Plant & Food research
Taxid 33069
Total Gap Length 908
Translation Table 11
tRNA Count (total) 52
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LKEH00000000.1